| DU Zongjun,WANG Jing,YANG Lijun,CHEN Guanjun. 2011. Identification of a marine agarolytic bacterium Agarivorans albus QM38 and cloning and sequencing its beta-agarase genes. Acta Oceanologica Sinica, (1):118－124 |
| Identification of a marine agarolytic bacterium Agarivorans albus QM38 and cloning and sequencing its beta-agarase genes |
| Identification of a marine agarolytic bacterium Agarivorans albus QM38 and cloning and sequencing its beta-agarase genes |
| Received:October 12, 2009 Revised:June 03, 2010 |
| DOI：10.1007/s13131-011-0098-3 |
| Key words:marine bacteria isolation and characterization agarase gene cloning Agarivorans albus |
| 中文关键词: marine bacteria isolation and characterization agarase gene cloning Agarivorans albus |
| 基金项目:Shandong Provincial Natural Science Foundation, China under contract No. ZR2009EQ009; Independent Innovation Foundation of Shandong University (IIFSDU); Key Lab of Marine Bioactive Substance and Modern Analytical Technique, SOA, China under contract No. MBSMAT-2009-07. |
| Author Name | Affiliation | E-mail | | DU Zongjun | State Key Laboratory of Microbial Technology, College of Life Science, Shandong University, Jinan 250100, China
College of Marine Science, Shandong University at Weihai, Weihai 264209, China | | | WANG Jing | Weihai Entry-Exit Inspection and Quarantine Bureau, Weihai 264200, China | | | YANG Lijun | Weihai Entry-Exit Inspection and Quarantine Bureau, Weihai 264200, China | | | CHEN Guanjun | State Key Laboratory of Microbial Technology, College of Life Science, Shandong University, Jinan 250100, China
College of Marine Science, Shandong University at Weihai, Weihai 264209, China | guanjun@sdu.edu.cn |
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| Abstract: |
| A total of 117 agar-decomposing cultures were isolated from coastal seawater around Qingdao, China. The phenotypic and agarolytic features of an agarolytic isolate, QM38, were investigated. The strain was gram negative, strictly aerobic, curved rod and polar flagellum. On the basis of several phenotypic characters, biochemical and morphological characters and phylogenetic analysis of the gene coding for the 16S rRNA, the strain was identified as Agarivorans albus strain QM38. This strain can liquefy the agar on the solid agar plate. An excellular agarase activity was determined in liquid culture. The enzyme exhibited maximal activity at 40 ℃, pH 7.6. Its activity was greatly affected by different concentrations of agarose. The highest activity 32 U/ml was achieved in the culture supernatant. The hydrolytic product was analyzed by fluorophore-assisted carbohydrate electrophoresis (FACE). After complete hydrolysis of agarose, a series of agaro-oligosaccharides were produced. The main products of the enzymes were oligosaccharides in the degree of polymerization (DP) of 2, 4, 6 and 8. Three genes agaD01, agaD02 and agaD03, encoding β-agarases, had been cloned from genomic DNA of Agarivorans albus strain QM38. The open reading frame of agaD01, consisted of 2 988 bp, and shared 95.5%-98.9% identity to the β-agarase genes of some strains of Vibrio and Agarivorans. Gene agaD02 comprised 2 868 bp and encoded a 955-amino-acid protein. It showed 97.4% and 98.7% identity to the β-agarase genes of strain Vibrio sp. PO-303 and strain Vibrio sp. JT0107, respectively. Only partial sequence of agaD03 gene has been cloned. It showed 96.5% identity to β-agarase gene (agaB) of Pseudoalteromonas sp. CY24, and shared 96.8% identity to β-agarase-c gene of Vibrio sp. PO-303. |
| 中文摘要: |
| A total of 117 agar-decomposing cultures were isolated from coastal seawater around Qingdao, China. The phenotypic and agarolytic features of an agarolytic isolate, QM38, were investigated. The strain was gram negative, strictly aerobic, curved rod and polar flagellum. On the basis of several phenotypic characters, biochemical and morphological characters and phylogenetic analysis of the gene coding for the 16S rRNA, the strain was identified as Agarivorans albus strain QM38. This strain can liquefy the agar on the solid agar plate. An excellular agarase activity was determined in liquid culture. The enzyme exhibited maximal activity at 40 ℃, pH 7.6. Its activity was greatly affected by different concentrations of agarose. The highest activity 32 U/ml was achieved in the culture supernatant. The hydrolytic product was analyzed by fluorophore-assisted carbohydrate electrophoresis (FACE). After complete hydrolysis of agarose, a series of agaro-oligosaccharides were produced. The main products of the enzymes were oligosaccharides in the degree of polymerization (DP) of 2, 4, 6 and 8. Three genes agaD01, agaD02 and agaD03, encoding β-agarases, had been cloned from genomic DNA of Agarivorans albus strain QM38. The open reading frame of agaD01, consisted of 2 988 bp, and shared 95.5%-98.9% identity to the β-agarase genes of some strains of Vibrio and Agarivorans. Gene agaD02 comprised 2 868 bp and encoded a 955-amino-acid protein. It showed 97.4% and 98.7% identity to the β-agarase genes of strain Vibrio sp. PO-303 and strain Vibrio sp. JT0107, respectively. Only partial sequence of agaD03 gene has been cloned. It showed 96.5% identity to β-agarase gene (agaB) of Pseudoalteromonas sp. CY24, and shared 96.8% identity to β-agarase-c gene of Vibrio sp. PO-303. |
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